Publications 2006

Refereed Journals - Lehtiartikkelit

A
Alminaite, Agne; Halttunen, Vera; Kumar, Vibhor; Vaheri, Antti; Holm, Liisa; Plyusnin, Alexander
Oligomerization of Hantavirus Nucleocapsid Protein: Analysis of the N-Terminal Coiled-Coil Domain.
Journal of Virology, 2006. Vol. 80, No. 18, pp. 9073-9081.
Ahveninen, J.; Jääskeläinen, Iiro P.; Raij, T.; Bonmassar, G.; Sasha, D.; Hämäläinen, M.; Levänen, S.; Lin, F.; Sams, M.; Shinn-Cunningham, B.; Witzel, T.; Bellieau, J.
Task-modulated "what" and "where" pathways in human auditory cortex.
Proceedings of the National Academy of Sciences, 2006. Vol. 103, pp. 14608-14613.
Aittoniemi, J., Niemela, P. S., Hyvonen, M. T., Karttunen, M., and Vattulainen, I.
Specific interactions between cholesterol, sphingomyelin and POPC.
Biophysical Journal, 2006. Vol. 90, 371a.
Aittoniemi, Jussi; Rog, Tomasz; Niemelä, Perttu; Pasenkiewicz-Gierula, M.; Karttunen, Mikko, Vattulainen, Ilpo
Tilt: Major Factor in Sterols Ordering Capacity in Membranes.
Journal of Physical Chemistry B Letter, 2006. Vol. 110, 25562-25564.
Ala-Korpela, Mika; Lankinen, Niko; Salminen, Aino; Suna, Teemu; Soininen, Pasi; Laatikainen, Reino; Ingman, Petri; Jauhiainen, Matti; Taskinen, Marja-Riitta; H'derger, Karoly; Kaski, Kimmo
The inherent accuracy of 1H NMR spectroscopy to qauantify plsma lipoproteins is subclass dependent.
Atherosclerosis, 2006.
Ala-Korpela, Mika; Sipola, Petri; Kaski, Kimmo
Molecular Detection and Characterisation of Atherothrombosis by Magnetic Resonance-Potential Tools for Individual Risk Assessment and Diagnostics.
Annals of Medicine, 2006. No. 38, pp. 322-336.
Alfthan, Sebastian von; Haynes, Peter; Kaski, Kimmo; Sutton, Adrian
Are the structures of twist grainboundaries ordered at O K.
Physical Review Letters, 2006. Vol. 96, p. 55505.
Ahveninen, J.; Jääskeläinen, I.P.; Osipova, M.; Huttunen, M.O.; Ilmoniemi, R.J.; Kaprio, J.; Lönnqvist, J.; Manninen, M.; Pakarinen, S.; Therman, S.; Näätänen, R.; Cannon, T.D.
Inherited auditory-cortical dysfunction in twin pairs discordant for schizophrenia.
Biological Psychiatry, 2006. Vol. 60, 612-620.
B
Brandt, Sami S.; Ziese, Ulrike
Automatic TEM Image Alignment by Trifocal Geometry.
Journal of Microscopy, 2006. Vol. 222, No. 1, pp. 1-14.
Boxberg, Fredrik; Tulkki, Jukka
Polarization of gain and symmetry breaking by inter-band coupling in Quantum Well Lasers.
Journal of Applied Physics, 2006. Vol. 100, No. 6, 063108.
Brandt, Sami S.
Maximum Likelihood Robust Regression by Mixture Models.
Journal of Mathematical Imaging and Vision, 2006. Vol. 25, pp. 25-48.
F
Falck, E., Hautala, J. T., Karttunen, M., Kinnunen, P. K. J., Patra, M., Saaren-Seppälä, H., Vattulainen, I., Wiedmer, S. K., and Holopainen, J. M.
Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity.
Biophysical Journal, 2006. Vol. 91 , 1787-1799.
Falck, E., Rog, T., Karttunen, M., and Vattulainen, I.
Diffusion mechanisms of lipids in bilayers.
Biophysical Journal, 2006. Vol. 90, 367a.
G
Gurtovenko, Andrey A.; Lyulin, Sergey V.; Karttunen, Mikko; Vattulainen, Ilpo
Molecular Dynamics Study of Charged Dendrimers in Salt-Free Solution: Effect of Counterions.
Journal of Chemical Physics, 2006. Vol. 124, 094904.
H
Hänninen, Helena; Holmström, Miia; Vesterinen, Paula; Karvonen, Milla; Väänänen, Heikki; Oikarinen, Lasse; Mäkijärvi, Markku; Nenonen, Jukka; Lauerma, Kirsi; Katila, Toivo; Toivonen, Lauri
Magnetogardiographic assessment of healed myocardial infarction.
The Annals of Noninvasive Electrocardiography, 2006. Vol. 11, No. 3,
Hekkala, Anna-Mari; Väänänen, Heikki; Swan, Heikki; Oikarinen, Lasse; Viitasalo, Matti; Toivonen, Lauri
Reproducibility of computerized measurements of QT interval from multiple leads at rest and during exercise.
Annals of noninvasive electrocardiology, 2006. Vol. 11, No. 4, 318-26.
Haapalahti, Petri; Viitasalo, Matti; Perhonen, Merja; Mäkijärvi, Markku; Väänänen, Heikki; Oikarinen, Lasse; Hekkala, Anna-Mari; Salorinne, Yrjö; Swan, Heikki, Toivonen,Lauri
Ventricular Repolarization and Heart Rate Responses During Cardiovascular Autonomic Function Testing in LQT1 Subtype of long QT Syndrome.
Pacing and clinical elektrophysiology, 2006. Vol. 29, No. 10, 1122-9.
Häyrynen, Teppo; Boxberg, Fredrid; Tulkki, Jukka
Doubling of conductance steps in Si/SiO2 quantum point contact.
Journal of Applied Physics, 2006. Vol. 100, No. 2, 024904.
I
Ilin, A.; Valpola, H.; Oja, E.
Exploratory Analysis of Climate Data Using Source Separation Methods.
Neural Networks, 2006. Vol. 19, pp. 155-167.
K
Korhonen, Petri; Husa, Terhi; Tierala, Ilkka; Väänänen, Heikki; Mäkijärvi, Markku; Katila, Toivo; Toivonen, Lauri
QRS duration in high-resolution methods and standard ECG in risk assessment after first and recurrent myocardial infarctions.
Pacing and clinical electrophysiology, 2006.
Kumpula, Jussi; Sutton, Adrian; Kaski, Kimmo
Using the quantized mean-field method to model Joule heating in a short nano-conductor.
Chemical Physics, 2006. pp. 659-666.
Kumar, Vibnor; Heikkonen, Jukka; Rissanen, Jorma; Kaski, Kimmo
Description lenght Denosing with Histogram Models.
IEEE transaction on signal Processing, 2006. Vol. 54, No. 8, pp. 2922-2928.
Kumar, Vibhor; Heikkonen, Jukka; Rissanen, Jorma; Kaski, Kimmo
Minimum description length denoising with histogram models.
IEEE Transactions on information theory, 2006. Vol. 54, No. 8, 2922-2928.
Korhonen, Petri; Tierala, Ilkka; Väänänen, Heikki; Mäkijärvi, Markku; Katila, Toivo; Toivonen, Lauri
Increased Intra-QRS Fragmentation in Magnetocardiography as a Predictor of Arrhytmic Events and Mortality in Patients with Cardiac Dysfunction after Myocardial Infarction.
Journal of Cardiovascular Electrophysiology, 2006. Vol. 17, No. 4, 396-401.
Komssi, S.; Ilmoniemi, R.J.
Uutta tietoa aivoista magneettistimulaatiolla ja elektroenkefalografialla.
Duodecim, 2006. Vol. 122, 2499-2508.
Kauhanen, Laura; Nykopp, Tommi; Sams, Mikko
Classification of single MEG trials related to left and right index finger movements.
Clinical Neurophysiology, 2006. Vol. 117, No. 2, 430-439.
Kauhanen, Laura; Nykopp, Tommi; Lehtonen, Janne; Jylänki, Pasi; Heikkonen, Jukka; Rantanen, Pekka; Alaranta, Hannu; Sams, Mikko
EEG and MEG Brain-Computer Interface for Tetraplegic Patients.
IEEE Transaction on Neural Systems and REhabilitation, 2006. Vol. 14, No. 2, 190-193.
Kannala, Juho; Brandt, Sami S.
A Generic Camera Model and Calibration Method for Conventional, Wide-Angle, and Fish-Eye Lenses.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2006. Vol. 22, No. 8, pp. 1335-1340.
Korvenoja, A.; Kirveskari, E.; Aronen, H.J.; Avikainen, S.; Brander, A.; Huttunen, J.; Ilmoniemi, R.J.; Jääskeläinen, J.E.; Kovala, T.; Mäkelä, J.P.; Salli, E.; Seppä, M.
Sensorimotor cortex localization: comparison of magnetoencephalography, functional MR imaging and intraoperative cortical mapping.
Radiology, 2006. Vol. 241, 213-222.
L
Liimatainen, Timo; Lehtimäki, Kimmo; Ala-Korpela, Mika; Hakumäki, Juhana
Identification of Mobile Cholesterol Compounds in Experimental Gliomas by H1 MRS In Vivo: Effects of Ganciclovir-Induced Apoptosis on Lipids.
FEBS Letters, 2006. Vol. 580, pp. 4746-4750.
M
Murtola, T., Falck, E., Rog, T., Karttunen, M., and Vattulainen, I.
Systematic coarse-graining on multicomponent lipid bilayers.
Biophysical Journal, 2006. Vol. 90, 289a.
Malinovschi, Andrei; Janson, Christer; Holmkvist, Thomas; Norbäck, Dan; Meriläinen, Pekka; and Högman, Marieann
Smoking effect on exhaled nitric oxide (NO) flow-independent NO exchange parameters.
European Respiratory Journal, 2006. Vol. 28, No. 2, 339-45.
Meriläinen, Pekka
Uloshengitysilman typpioksidipitoisuuksista.
Finnanest, 2006. Vol. 39, No. 4, 316-17.
Möttönen, R.; Calvert, G.; Jääskeläinen, Iiro P.; Matthews, P.; Thesen, T.; Tuomainen, J.; Sams, M.
Perceiving identical sounds as speech or non-speech modulates activity in the left posterior superior temporal sulcus.
NeuroImage, 2006. Vol. 30, pp. 563-569.
Murtola, T., Róg, T., Falck, E., Karttunen, M., Vattulainen, I.
Transient Ordered Domains in Single-Component Phospholipid Bilayers.
Physical Review Letters, 2006. Vol. 97, 238102.
Murtola, T.; Róg, Tomasz; Falck, E.; Karttunen, Mikko; Vattulainen, I.
Transient ordered domains in pure phospholipid bilayers.
Physical Review Letters, 2006. Vol. 97, p. 238102.
Murzyn, K.; Róg, Tomasz; Blicharski, W.; Dutka, M.; Pyka, J.; Szytula, S.; Froncisz, W.
Influence of the disulfide bond configuration on the dynamics of the spin label attached to cytochrome c..
Proteins, 2006. Vol. 62, pp. 1088-1100.
Murzyn, K.; Zhao, W.; Karttunen, M.; Kurdziel, M.; Róg, T.
The Dynamics of Water at the Membrane Surface - Effect of the Headgroup structure.
Biointerphases, 2006. Vol. 1, pp. 98-105.
Musaccia, G.; Sams, M.; Nicol, T.; Kraus, N.
Seeing speech affects acoustic information processing in the human brainstem.
Experimental Brain Research, 2006. Vol. 168, pp. 1-10.
Mäkinen, Ville-Petteri; Soininen, Pasi; Forsblom, Carol; Parkkonen, Maija; Ingman, Petri; Kaski, Kimmo; Groop, Per-Henrik; Ala-Korpela, Mika
Diagnosing diabetic nephropathy by 1H NMR metabonomics of serum.
Magnetic Resonance Materials in Physics, Biology and Medicine, 2006.
Malinovschi, Andrei; Janson, Christer; Norback, Dan; Holmqvist, Thomas; Meriläinen, Pekka; Högman Marieann
IgE sensitisation in relation to flow-independent nitric oxide exchange parameters.
Respiratory Research, 2006. Vol. 7, No. 1, 92.
N
Nymark, Soile; Haldin, Charlotte; Tenhu, Heikki; Koskelainen, Ari
A New Method for Measuring Free Drug Concentration: Retinal Tissue As a Biosensor.
Investigative Ophthalmology & Visual Science, 2006. Vol. 47, No. 6, 2583-8.
Nissilä, Ilkka; Hebden, Jeremy C; Jennions, David; Heino, Jenni; Schweiger, Martin; Kotilahti, Kalle; Noponen, Tommi; Gibson, Adam; Järvenpää, Seppo; Lipiäinen, Lauri; Katila, Toivo
Comparison between a time-domain and a frequency-domain system for optical tomography.
Journal of Biomedical Optics, 2006. Vol. 11, 064015.
Nykopp, Tommi; Laitinen, Laura; Heikkonen, Jukka; Sams, Mikko
Statistical methods for MEG Based finger movement classification.
IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2006 .
O
Oksanen, Jani; Tulkki, Jukka
Coherent optical logic by laser amplifiers with feedback.
IEEE Journal of lightwave technology, 2006. Vol. 24,
Oksanen, Jani; Tulkki, Jukka
Fast all-optical flip-flop memory exploiting the electric field nonlinearity of coherent laser amplifiers.
IEEE Journal of Quantum electronics, 2006. Vol. 42, pp. 509-516.
Oksanen, Jani; Tulkki, Jukka
Fast coherent all-optical flip-flop memory.
Applied physics letters, 2006. Vol. 88, pp. 18118-1 - 18118-3.
P
Pekkola, J.; Laasonen, M.; Ojanen, A.; Jääskeläinen, Iiro P.; Kujala, T.; Sams, M.
Perception of matching and conflicting audiovisual speech in dyslexic and fluent readers: an fMRI study at 3 Tesla.
NeuroImage, 2006. Vol. 29, pp. 797-807.
Putkonen, Päivi; Jutila, Leena; Granström, Marja-Liisa; Gaily, Eija; Kälviäinen, Reetta
Direct costs in epilepsy surgery.
Epilepsia, 2006. Vol. 47, No. S3, 17.
Pulvermüller, F.; Shtyrov, Y.; Ilmoniemi, R.J.; Marslen-Wilson, W.D.
Tracking speech comprehension in space and time.
NeuroImage, 2006. Vol. 31, 1297-1305.
Patra, M., Salonen, E., Terama, E., Vattulainen, I., Faller, R., Lee, B.W., Holopainen, J., and Karttunen, M.
Under the influence of alcohol: The effect of ethanol and methanol on lipid bilayers.
Biophysical Journal, 2006. Vol. 90, 1121.
Pekkola, J.; Ojanen, V.; Autti, T.; Jääskeläinen, Iiro P.; Möttöinen, R.; Sams, M.
Attention to visual speech gestures enhances activity in the left planum temporale.
Human Brain Mapping, 2006. Vol. 27, pp. 471-477.
Perhonen, Marja; Haapalahti, Petri, Kivistö, Sari; Hekkala, Anna-Mari; Väänänen, Heikki; Swan, Heikki; Toivonen, Lauri
Effect of physical training on ventricular repolarization in type 1 long QT syndrome: a pilot study in asymptomatic carriers of the G589D KCNQ1 mutation.
Europace, 2006. Vol. 8, No. 10, 894-8.
R
Repakova, J., Holopainen, J. M., Karttunen, M., and Vattulainen, I.
Influence of pyrene-labeling on fluid lipid membranes.
The Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 2006. Vol. 110, pp. 15403-15410.
Róg, Thomasz; Pasenkiewicz-Gierula, M.
Cholesterol effects on the unsaturated phosphatidylcholine bilayer: a molecular dynamics simulation study.
Biochimie, 2006. Vol. 88, pp. 449-460.
Róg, Thomasz; Pasenkiewicz-Gierula, M.
Cholesterol-sphingomieline interactions: a molecular dynamics simulation study.
Biophysical Journal, 2006. Vol. 91, 3756-3767.
S
Suna, Teemu; Hardey, Michael; Huhtinen, Jouni; Hiltunen, Yrjö; Kaski, Kimmo; Heikkonen, Jukka; Ala-Korpela, Mika
Self-Organising Map Approach to Individual Profile: Age, Sex and Culture in Internet Dating.
Sociological Research Online, 2006. Vol. 11, No. 1,
T
Terama, E. M., Patra, M., Rowat, A., Trandum, C., Westh, P., Salonen, E., Karttunen, M., and Vattulainen, I.
Dynamics, kinetics and partitioning of alcohols in lipid membranes.
Biophysical Journal, 2006. Vol. 90, 508a.
Töyli, J.; Hansén, S-O.; Smeds, R.
Plan for profit and achieve profit: lessons learnt from a business management simulation.
Production Planning & Control, 2006. Vol. 17, No. 6, pp. 584-595.
Tibély, Gergely; Onnela, Jukka-Pekka; Saramäki, Jari; Kaski, Kimmo; Kertész, János
Spectrum, intensity and coherence in weighted networks of a financial market.
Physica A, 2006. Vol. 370, No. 1, pp. 145-150.
Toivonen, Riitta; Onnela, Jukka-Pekka; Saramäki, Jari; Hyvönen, Jörkki; Kaski, Kimmo
A Model For Social Networks.
Physica A, 2006. Vol. 371, No. 2, pp. 851-860.
V
von Alfthan, Sebastian; Kaski, Kimmo; Sutton, Adrian
Order and structural units in simulations of twist grain boundaries in silicon at absolute zero.
Physical Review B (Condensed Matter and Materials Physics), 2006. Vol. 74, p. 134101.
Vainio, Saara; Jansen, Maurice; Koivusalo, Mirkka; Róg, Tomasz; Karttunen, Mikko; Vattulainen, Ilpo; Ikonen, Elina
Desmosterol cannot replace cholesterol in lipid rafts.
The journal of biological chemistry, 2006. Vol. 281, pp. 348-355.
Vattulainen, Ilpo; Karttunen, Mikko
Modeling of biologically motivated soft matter systems.
Handbook of Theretical and Computational Nanotechnology (invited review), 2006. Vol. 6, 361-417.
Viitasalo, Matti; Oikarinen, Lasse; Swan, Heikki; Glatter, Kathryn A.; Väänänen, Heikki; Fodstad, Heidi; Chiamvimonvat, Nipavan; Kontula, Kimmo; Toivonen, Lauri; Scheinman, Melvin M.
Ratio of late to early T-Wave peak amplitude in 24-h electrocardiographic recordins as indicator of aymptom history in patients with long-QT Syndrome types 1 and 2.
American College of Cardiology. Journal, 2006. Vol. 41 (Epub 2005 Dec 9), No. 1, pp. 112-20.
Viitasalo, Matti; Oikarinen, Lasse; Swan, Heikki; Väänänen, Heikki; Järvenpää, Jere; Hietanen, Harri; Karjalainen, Jouko; Toivonen, Lauri
Effects of beta-blocker therapy on ventricular repolarization documented by 24-h electrocardiography in patients with type 1 long-QT syndrome.
Journal of the American College of Cardiology, 2006. Vol. 48, No. 4, 747-53.

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