Publications 2007

Refereed Journals - Lehtiartikkelit

A
Ala-Korpela, Mika
The potential role of body fluid 1H NMR metabonomics as a prognostic and diagnostic tool.
Expert Review of Molecular Diagnostics, 2007. Vol. 7, 761-773.
Ala-Korpela, Mika; Lankinen, Niko; Salminen, Aino; Suna, Teemu; Soininen, Pasi; Laatikainen, Reino; Ingman, Petri; Jauhiainen, Matti; Taskinen, Marja-Riitta; Héberger, Karoly; Kaski, Kimmo
The inherent accuracy of 1H NMR spectroscopy to quantify plasma lipoproteins is subclass dependent.
Atherosclerosis, 2007. Vol. 190, 352-359.
Alexandrov, Y.; Klucharev, V.; Sams, M.
Effect of emotional context in auditory cortex processin.
International Journal of Psychophysiology, 2007. Vol. 65, 261-271.
von Alfthan, S.; Sutton, A.; Kaski, K
Temperature-induced structural transitions at twist boundaries in silicon.
Physical Review B , 2007. Vol. 76, 245317.
Alhoniemi, Esa; Honkela, Antti; Lagus, Krista; Seppä, Jeremias; Wagner, Paul; Valpola, Harri
Compact Modeling of Data Using Independent Variable Group Analysis.
IEEE Transactions on Neural Networks, 2007. Vol. 18, No 6, 1762-1776.
Auranen, T.; Nummenmaa, A.; Hämäläinen, M. S.; Jääskeläinen, I. P.; Lampinen, J.; Vehtari, A.; Sams, M.
Bayesian inverse analysis of neuromagnetic data using cortically constrained multiple dipoles.
Human Brain Mapping, 2007. Vol. 28 (10), No 10, 979-994.
Ala-Korpela, Mika
Critical evaluation of 1H NMR metabonomics of serum as a methodology for disease risk assessment and diagnostics.
Clinical Chemistry and Laboratory Medicine, 2007.
B
Boxberg, Fredrik; Tulkki, Jukka
Theory of the electronic structure and carrier dynamics of strain-induced quantum dots.
Reports on Progress in Physics, 2007. Vol. 70, 1325-1471.
Boxberg, Fredrik; Tulkki, Jukka; Yusa, Go; Sakaki, Hiroyuki
Cooling of radiative quantum-dot excitons by terahertz radiation: A spin-resolved Monte Carlo carrier dynamics model.
Physical Review B, 2007. Vol. 75, No 11, 115334.
Boxberg, Fredrik; Tulkki, Jukka
Modelling of the electronic structure and carrier dynamics of strain-induced quantum dots.
Reports on Progress in Physics, 2007. Vol. 70, No 8, 1425-1471.
Brandt, Sami S.; Kolehmainen, Ville
Structure-From-Motion Without Correspondence from Tomographic Projections by Bayesian Inversion Theory .
IEEE Transcations on Medical Imaging, 2007. Vol. 26, No 2, 238-248.
C
Castelló, X.; Toivonen, R.; Equíluz, V. M.; Saramäki, J.; Kaski, K.; San Miguel, M.
Anomalous lifetime distributions and topological traps in ordering dynamics.
Europhysics Letters, 2007. Vol. 79, No 66006.
Cincotti, Febo; Kauhanen, Laura; Aloise, Fabio; Palomäki, Tapio; Capurusso, Nicholas; jylänki, Pasi; Mattia, Donatella; Babiloni, Fabio; Vanacker, Gerolf; Nuttin, Marnix; Marciani, Maria Grazia; José del, R.
Vibrotactile Feedback for Brain-Computer Interface Operation.
Computational Intelligence and Neuroscience, 2007. ID 48937.
D
Degerman, A.; Rinne, T.; Pekkola, J.; Autti, T.; Jääskeläinen, I.; Sams, M.; Alko, K.
Human brain activity associated with audiovisual perception and attention.
Neuroimage, 2007. Vol. 34, 1683-1691.
E
Eisler, Zoltan; Kertesz, Janos
Liquidity and the multiscaling properties of the volume traded on the stock market.
Europhysics Letters, 2007. Vol. 77, 28001.
H
Heimo, T.; Saramäki, J.; Onnela, J-P.; Kaski, K.
Spectral and network methods in the analysis of correlation matrices of stock returns.
Physica A, 2007. Vol. 383, No 147,
Högman, M. ja Meriläinen, P.
Extendend NO analysis in asthma.
Journal of Breath Research, 2007. Vol. 1, no 2.
Honkela, Antti; Valpola, Harri; Ilin, Alexander; Karhunen, Juha
Blind Separation of Nonlinear Mixtures by Variational Bayesian Learning.
Digital Signal Processing, 2007. Vol. 17, No 5, pp. 914-934.
Heiskala, Juha; Neuvonen, Tuomas; Grant, P. Ellen; Nissilä, Ilkka
Significance of tissue anisotropy in optical tomography of the infant brain.
Applied Optics, 2007. Vol. 46, No 10, 1633-1640.
Hekkala, Anne-Mari; Swan, Heikki; Väänänen, Heikki; Viitasalo, Matti; Toivonen, Lauri
The effect of antihistamine cetirizine on ventricular repolarization in congenital long QT syndrome.
Journal of cardiovascular electrophysiology, 2007. Vol. 18, No 7, 691-5.
J
Järvenpää, Jere; Oikarinen, Lasse; Korhonen, Petri; Väänänen, Heikki; Toivonen, Lauri; Viitasalo, Matti
Changing capacity of electrocardiographic ventricular repolarization infarction patients with and without nonfatal cardiac arrest.
The American Journal of Cardiology, 2007. Vol. 99, No 3, 295-9.
Jääskeläinen, I. P.; Ahvenninen, J.; Belliveau, J. W.; Raij, T.; Sams, M.
Short-term plasticity in auditory cognition.
Trends in Neuroscience, 2007. Vol. 30, No 12, 653-661.
K
Kalliomäki, Ilkka; Lampinen, Jouko
On steerability of Gabor-type filters for feature detection.
Pattern Recognition Letters, 2007. Vol. 28, No 8, 904-911.
Kauhanen, L. K.; Jylänki, P.; Lehtonen, J.; Rantanen, P.; Alaranta, H.; Sams, M.
EEG-based Brain-Computer interface for tetraplegics.
Computational Intelligence and Neuroscience, Article ID 23864, 11 pages 2007.
Kauramäki, J.; Jääskeläinen, I. P.; Sams, M.
Selective Attention Increases Both Gain and Feature Selectivity of the Human Auditory Cortex.
Public Library of Science, 2007. Vol. 2, No 9, d909.
Koikkalainen, Juha; Hirvonen, Jussi; Nyman, Mikko; Lötjönen, Jyrki; Hietala, Jarmo; Ruotsalainen, Ulla
Shape variabilitys of the human striatum - effects of age and gender.
NeuroImage, 2007. Vol. 34, No 1, 85-93.
Kumpula, J. M.; Onnela, J-P.; Saramäki, J.; Kaski, K.; Kertész, J.
Emergence of communities in weighted complex networks.
Physical Review Letters, 2007. Vol. 99, No 228701,
Kumpula, J.; Saramäki, J.; Kaski, K.; Kertész, J.
Limited resolution in complex network community detection with Potts model approach.
European Physical Journal B, 2007. Vol. 75, No 41,
Kumpula, Jussi M.; Saramaki, Jari; Kaski, Kimmo; Kertesz, Janos
Limited resolution and multiresolution methods in complex network community detection.
Fluctuation and noise letters, 2007. Vol. 7, No 3, pp. L209-L214.
Kyttä, Klaus; Kaski, Kimmo; Barrio, R. A.
Complex Turing patterns in non-linearly coupled systems.
Physica A: Statistical Mechanics and its Applications, 2007. Vol. 385, No 1, 105-114.
Kätsyri, Jari; Sams, Mikko
The effect of dynamics on identifying basic emotions from synthetic and natural faces.
International Journal of Human-Computer Studies, 2007.
L
Lehtonen, J.; Jylänki, P.; Kauhanen, L.; Sams, M.
Online classification of single EEG trials during finger movements.
IEEE Transactions on Biomedical Engineering, 2007. Vol. 55, 713-720.
Laksameethanasan, Danai; Brandt, Sami S.; Engelhardt, Peter; Renaud, Olivier, Shorte, Spencer
A Bayesian Reconstruction Method for Micro-Rotation Imaging in Light Microscopy.
Microscopy research and technique, 2007. Vol. 71, 158-167.
M
Musacchia, G.; Sams, M.; Skoe, E.; Kraus, N.
Musicians have enhanced subcortical auditory and audiovisual processing of speech and music.
Proceedings of the National Academy of Sciences, USA, 2007. Vol. 104, 15894-15898.
Mäkinen, Ville-Petteri; Groop, Per-Henrik; Ala-Korpela, Mika
Metabonomik - på väg mot individuell riskbedömning.
Finska Läkaresällskapets Handlingar, 2007. Vol. 167, 40-46.
Mäkinen, Ville-Petteri; Soininen, Pasi; Forsblom, Carol, Parkkonen, Maikki; Ingman, Petri; Kaski, Kimmo; Groop, Per-Henrik; Ala-Korpela, Mika
1H NMR metabonomics approach to the disease continuum of diabetic complicatons and premature death.
Molecular Systems Biology, 2007.
Mäkinen, Ville-Petteri; Soininen, Pasi; Forsblom, Carol; Parkkonen, Maikki, Ingman, Petri; Kaski, Kimmo; Ala-Korpela, Mika; Groop, Per-Henrik
Proton NMR metabonomics of type 1 diabetes reveals multivariate biochemical characteristics of diabetic complications.
Diabetologia, 2007. Vol. 50, No 1, S466, 1134.
N
Nikulin, V.V.; Linkenkaer-Hansen, K.; Nolte, G.; Lemm, S.; M üller, K.R.; Ilmoniemi, R.J.; Curio, G.
A novel mechanism for evoked resposes in the human brain.
The European Journal of Neuroscience, 2007. Vol. 25, 3146-3154.
Nummenmaa, A.; Auranen, T.; Hämäläinen, M.; Jääskeläinen, I. P.; Sams, M.; Vehtari, A.; Lampinen, J.
Automatic relevance-determination based on hierarchical Bayesian MEG inversion in practice .
NeuroImage, 2007. Vol. 37, No 3, pp. 876-889.
Nummenmaa, Aapo; Auranen, Toni; Hämäläinen, Matti S.; Jääskeläinen, Iiro P.; Lampinen, Jouko; Sams, Mikko; Vehtari, Aki
Hierarchical Bayesian estimates of distributed MEG sources: theoretical aspects and comparison of variational and MCMC methods.
NeuroImage, 2007. Vol. 33, No 2, 669-685.
O
Onnela, J-P.; Saramäki, J.; Hyvönen, J.; Szabó, G.; Argollo de Menezes, M.; Kaski, K.; Barabási, A-L.; Kertész, J.
Analysis of a large-scale weighted network of one-to-one human communications.
New Journal of Physics, 2007. Vol. 9, No 179,
Onnela, J-P.; Saramäki, J.; Hyvönen, J.; Szabó, G.; Lazer, D.; Kaski, K.; Kertész, J.; Barabasi, A-L.
Structure and tie strengths in mobile communication networks.
Proceedings of the National Academy os Sciences (USA), 2007. Vol. 104, No 7332,
P
Porthan, Kimmo; Virolainen, Juha; Hiltunen, Timo; Viitasalo, Matti; Väänänen, Heikki; Dabek, Juhani; Hannila-Handelberg, Tuula; Toivonen, Lauri; Nieminen, Markku; Kontula, Kimmo; Oikarinen, Lasse
Relationship of electrocardiographic repolarization measures to echocardiographic left ventricular mass in men with hypertension.
Journal of Hypertension, 2007 . Vol. 25, No 9, 1951-7.
Patriarca, M.; Kuronen, A.; Robles, M.; Kaski K.
Three-dimensional interactive Molecular Dynamics program for the study of defect dynamics in crystals.
Computer Physics Communications, 2007. Vol. 176, 38-47.
R
Raiko, Tapani; Valpola, Harri; Harva, Markus; Karhunen, Juha
Building Blocks for Variational Bayesian Learning of Latent Variable Models.
Journal of Machine Learning Research, 2007. Vol. 8, pp. 155-201.
S
Sysi-Aho, Marko Tapani,; Vehtari, Aki; Velagapudi, Vidya; Westerbacka, Jukka; Yetukuri, Laxman; Bergholm, Robert; Taskinen, Marja-Riitta; Yki-Järvinen, Hannele; Orexic, Matej
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles.
Bioinformatics, 2007. Vol. 23, No 13, i519-i528.
Särkkä, Simo; Vehtari, Aki; Lampinen, Jouko
CATS benchmark time series prediction by Kalman smoother with cross-validated noise density.
Neurocomputing, 2007. Vol. 70, No 13-15, 2331-2341.
Sinha, S.; Saramäki, J.; Kaski, K.
Emergence of self-sustained patterns in small-world exicitable media.
Physical Review E, 2007. Vol. 76, No 015101(R),
Särkkä, Simo
On Unscented Kalman Filtering for State Estimation of Continuous-Time Nonlinear Systems.
IEEE Transactions on Automatic Control, 2007. Vol. 52, No 9, 1631-1641.
Särkkä, Simo; Vehtari, Aki; Lampinen, Jouko
Rao-Blackwellized Particle Filter for Multiple Target Tracking.
Information Fusion, 2007. Vol. 8, No 1, 2-15.
Suna, Teemu; Salminen, Aino; Soininen, Pasi; Laatikainen, Reino; Ingman, Petri; Jauhiainen, Matti; Taskinen, Marja-Riitta; Kaski, Kimmo; Ala-Korpela, Mika
1H NMR metabonomics of plasma lipoprotein subclasses - an elucidation of metabolic clustering by self-organising maps.
NMR in Biomedicine, 2007. Vol. 20, 658-672.
Stenroos, Matti; Mäntynen, Ville; Nenonen, Jukka
A Matlab library for solving quasi-static volume conduction problems using the boundary element method.
Computer Methods and Programs in Biomedicine, 2007. Vol. 88, No 3, 256-263.
Smith, D. M. D.; Onnela, J.-P.; Johnson, N. F.
Accelerating networks.
New Journal of Physics, 2007. Vol. 9, 181.
Schweiger, Martin; Nissilä, Ilkka; Boas, David; Arridge, Simon
Image reconstruction in optical tomography in the presence of coupling errors.
Applied Optics, 2007. Vol. 46, No 14, 2743-2756.
Saramäki, J.; Kivelä, M.; Onnela, J-P.; Kaski, K.; Kertész, J.
Generalizations of the clustering coefficient to weighted complex networks.
Physical Review E, 2007. Vol. 75, No 027105,
Soininen, Pasi; Öörni, Katariina; Maaheimo, Hannu; Laatikainen, Reino; Kovanen, Petri T.; Kaski, Kimmo; Ala-Korpela, Mika
1H NMR at 800 MHz Facilitates Detailed Phospholipid Follow-Up during Atherogenic Modifications in Low Density Lipoproteins.
Biochemical and Biophysical Researach Communications, 2007. Vol. 360, 290-294.
T
Toth, Bence; Kertesz, Janos
On the origin of the Epps effect.
Physica A, 2007. Vol. 382, 54.
V
Valkama, Sami; Nykänen, Antti; Kosonen, Harri; Ramani, Ramasubbu; Tuomisto, Filip; Engelhardt, Peter; Ten Brinke, Gerrit; Ikkala, Olli; Ruokolainen, Janne
Hierarchical porosity in self-assembled polymers: Post-modification of block copolymer-phenolic resin complexes by pyrolysis allows the control of micro- and mesoporosity.
Advanced Functional Materials, 2007. Vol. 17, No 2, pp. 183-190.
Vanhatalo, Jarno; Vehtari, Aki
Sparse Log Gaussian Processes via MCMC for Spatial Epidemiology.
JMLR Workshop and Conference Proceedings, 2007. No 1.
Vehtari, Aki; Mäkinen, Ville-Petteri; Soininen, Pasi; Ingman, Petri; Mäkelä, Sanna, M.; Savolainen, Markku, J.; Hannuksela, Minna, L.; Kaski, Kimmo; Ala-Korpela, Mika
A novel Bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data.
BMC Bioinformatics, 2007. Vol. 8, No Suppl. 2, S8.
Vesterinen, Paula; Väänänen, Heikki; Hänninen, Helena; Korhonen, Petri; Tierala, Ilkka; Husa, Terhi; Mäkijärvi, Markku; Toivonen, Lauri
Single-Lead Electrocardiographic Variables in the Detection of Prior Myocardial Infarction with Respect to Q-Wave Status and Infarct Age.
Cardiology, 2007. Vol. 109, No 4, 222-229.
Vesterinen, Paula; Väänänen, Heikki; SteNoos, Matti; Hänninen, Helena; Korhonen, Petri; Tierala, Ilkka; Husa, Terhi; Mäkijärvi, Markku; Toivonen, Lauri
Localization of prior myocardial infarction by repolarization variables.
International Journal of Cardiology, 2007.

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