Publications 2008

Refereed Journals - Lehtiartikkelit

A
Ala-Korpela, Mika
Critical evaluation of H-1 NMR metabonomics of serum as a methodology for disease risk assessment and diagnostics.
Clinical chemistry and laboratory medicine, 2008. Vol. 46, nro 1, pp. 27-42.
Anttonen, Olli; Väänänen, Heikki; Junttila, Juhani; Huikuri, Heikki V.; Viitasalo, Matti
Electrocardiographic transmural dispersion of repolarization in patients with inherited short QT syndrome.
Annals of noninvasive electrocardiology, 2008. Vol. 13, nro 3, pp. 295-300.
B
Bhattacharya, K.; Mukherjee, G.; Saramäki, J.; Kaski, K.; Manna, S. S.
The International Trade Network: weighted network analysis and modelling.
Journal of statistical mechanics-theory and experiment, 2008. P02002/1-10.
Boxberg, Fredrik; Tulkki, Jukka
Carrier dynamics of strain-induced quantum dots and THz radiation-induced exciton cooling.
Physica status solidi, 2008.
D
Davis, Chris; Kislyuk, Daniel; Jeesus, Kim; Sams, Mikko
The effect of viewing speech on auditory speech processing is different in the left and right hemispheres.
Brain Research, 2008. Vol. 1242, 151-161.
F
Falck, E., Rog, T., Karttunen, M., and Vattulainen, I.
Lateral Diffusion in Lipid Membranes Through Collective Flows.
Journal of the American Chemical Society, 2008. Vol. 139, 44-45.
H
Haapalahti, Petri; Viitasalo, Matti; Kaartinen, Maija; Väänänen, Heikki; Oikarinen, Lasse; Toivonen, Lauri
Electrocardiographic ventricular repolarization during cardiovascular autonomic function testing in patients with arrhythmogenic right ventricular cardiomyopathy.
Scandinavian Cardiovascular Journal, 2008. Nro 10,
Haapalahti, Petri; Viitasalo, Matti; Perhonen, Merja; Mäkijärvi, Markku; Väänänen, Heikki; Oikarinen, Lasse; Salorinne, Yrjo; Swan, Heikki; Toivonen, Lauri
Electrocardiographic interventricular dispersion of repolarization during autonomic adaptation in LQT1 subtype of long QT syndrome.
Scandinavian Cardiovascular Journal, 2008. Vol. 42, nro 2, pp. 130-136.
Havulinna, Aki S.; Paakkonen, Rauni; Karvonen, Marjatta; Salomaa, Veikko
Geographic patterns of incidence of ischemic stroke and acute myocardial infarction in Finland during 1991-2003.
Annals of epidemiology, 2008. Vol. 18, nro 3, pp. 206-213.
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Havulinna, Aki S.; Tienari, Pentti J.; Marttila, Reijo J.; Martikainen, Kirsti K.; Eriksson, Johan G.; Taskinen, Olli; Moltchanova, Elena; Karvonen, Marjatta
Geographical variation of medicated parkinsonism in Finland during 1995 to 2000.
Movement disorders, 2008. Vol. 23, nro 7, pp. 1024-1031.
Heikkinen, H.; Nymark, S.; Koskelainen, A.
Mouse cone photoresponses obtained with electroretinogram from the isolated retina.
Vision research, 2008. Vol. 48, nro 2, pp. 264-272.
Heimo, Tapio; Kumpula, Jussi M.; Kaski, Kimmo; Saramäki, Jari
Detecting modules in dense weighted networks with the Potts method.
Journal of statistical mechanics-theory and experiment, 2008. P08007/1-13.
Heimo, Tapio; Tibely, Gergely; Saramäki, Jari; Kaski, Kimmo; Kertész, Janos
Spectral methods and cluster structure in correlation-based networks.
Physica A: Statistical Mechanics and its Applications, 2008. Vol. 387, nro 23, pp. 5930-5945.
Hiltunen, Petri; Calvetti, Daniela; Somersalo, Erkki
An adaptive smoothness regularization algorithm for optical tomography.
Optics Express, 2008. Vol. 16, nro 24, pp. 19957-19977.
Hyvönen, Jörkki; Saramäki, Jari; Kaski, Kimmo
Efficient data structures for sparse network representation.
International journal of computer mathematics, 2008. Vol. 85, nro 8, pp. 1219-1233.
J
Johnson, Neil F.; Spagat, Michael; Gourley, Sean; Onnela, Jukka-Pekka; Reinert, Gesine
Bias in epidemiological studies of conflict mortality.
Journal of peace research, 2008. Vol. 45, nro 5, pp. 653-663.
Jurkko, Raija; Väänänen, Heikki; Mäntynen, Ville; Kuusisto, Jouni; Mäkijärvi, Markku; Toivonen, Lauri
High-Resolution Signal-Averaged Analysis of Atrial Electromagnetic Characteristics in Patients with Paroxysmal Lone Atrial Fibrillation.
Annals of Noninvasive Electrocardiology, 2008. Vol. 13, nro 4, 378-385.
Jääskeläinen, I.P.; Koskentalo, K.; Autti, T.; Balk, M.; Kauramäki, J.; Pomrén, C.; Sams, M.
Inter-Subject Synchronization of Prefrontal Cortex Hemodynamic Activity During Natural Viewing.
Open Neuroimaging Journal, 2008. Vol. 2, pp. 14-19.
Jääskeläinen, Iiro P.; Ahveninen, Jyrki; Belliveau, John W.; Raij, Tommi; Sams, Mikko
Short-term plasticity in auditory cognition.
Trends in Neurosciences, 2008. Vol. 30, nro 12, pp. 653-661.
Jääskeläinen, Iiro P.; Kauramäki, Jaakko; Tujunen, Juuso; Sams, Mikko
Formant transition-specific adaptation by lipreading of left auditory cortex N1m.
Neuroreport, 2008. Vol. 19, nro 1, pp. 93-97.
K
Kicic, D.; Lioumis, P.; Ilmoniemi, R. J.; Nikulin, V. V.
Bilateral changes in excitability of sensorimotor cortices during unilateral movement: Combined electroencephalographic and transcranial magnetic stimulation study.
Neuroscience, 2008. Vol. 152, nro 4, pp. 1119-1129.
Kislyuk, D.; Möttönen, R.; Sams, M.
Visual Processing Affects the Neural Basis of Auditory Discrimination.
Journal of Cognitive Neuroscience, 2008. Vol. 20, nro 12, pp. 2175-2184.
Koikkalainen, Juha; Tölli, Tuomas; Lauerma, Kirsi; Antila, Kari; Mattila, Elina; Lilja, Mikko; Lötjönen, Jyrki
Methods of Artificial Enlargement of the Training Set for Statistical Shape Models.
IEEE Transactions on Medical Imaging, 2008. pp. 1-14.
Korostenskaja, Milena; Kicic, Dubravko; Kähkönen, Seppo
The effect of methylphenidate on auditory information processing in healthy volunteers: a combined EEG/MEG study.
Psychopharmacology, 2008. Vol. 197, nro 3, pp. 475-486.
Kostiainen, T.; Welling, I.; Lahtinen, M.; Salmi, K.; Kahkonen, E.; Lampinen, J.
Modeling of Subjective Responses to Indoor Air Quality and Thermal Conditions in Office Buildings.
Hvac&r research, 2008. Vol. 14, nro 6, pp. 905-923.
Kousa, A.; Havulinna, A. S.; Moltchanova, E.; Taskinen, O.; Nikkarinen, M.; Salomaa, V.; Karvonen, M.
Magnesium in well water and the spatial variation of acute myocardial infarction incidence in rural Finland.
Applied geochemistry, 2008. Vol. 23, nro 4, pp. 632-640.
Kumpula, Jussi M.; Kivelä, Mikko; Kaski, Kimmo; Saramäki, Jari
Sequential algorithm for fast clique percolation.
Physical Review E, 2008. Vol. 78, nro 2, 026109/1-7.
Kumpula, Linda; Kumpula, Jussi; Taskinen, Marja-Riitta; Jauhiainen, Matti; Kaski, Kimmo; Ala-Korpela, Mika
Reconsideration of hydrophobic lipid distributions in lipoprotein particles.
Chemistry and Physics of Lipids, 2008. Vol. 155, no 1, pp. 57-62.
Kätsyri, Jari; Saalasti, Satu; Tiippana, Kaisa; von Wendt, Lennaul; Sams, Mikko
Impaired recognition of facial emotions from low-spatial frequencies in Asperger syndrome.
Neuropsychologia, 2008. Vol. 46, nro 7, pp. 1888-1897.
Kätsyri, Jari; Sams, Mikko
The effect of dynamics on identifying basic emotions from synthetic and natural faces.
International Journal of Human Computer Studies, 2008. Vol. 66, nro 4, pp. 233-242.
L
Laksameethanasan, Danai; Brandt, Sami S.; Engelhardt, Peter; Renaud, Olivier; Shorte, Spencer L.
A Bayesian reconstruction method for micro-rotation imaging in light microscopy.
Microscopy research and technique, 2008. Vol. 71, nro 2, pp. 158-167.
Lehtola, Ville; Linna, Riku; Kaski, Kimmo
Critical evaluation of the computational methods used in the forced polymer translocation.
Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), 2008. Vol. 78, 61803-61010.
Lehtonen, J.; Jylänki, P.; Kauhanen, L.; Sams, M.
Online classification of single EEG trials during finger movements.
IEEE Transactions on Biomedical Engineering, 2008. Vol. 55, nro 2, pp. 713-720.
Linna, Riku; Kaski, Kimmo
Analysis of DNA elasticity.
Physical Review Letters, 2008. Vol. 100, nro 16, pp. 168104-168107.
M
Mäkelä, Sanna M.; Jauhiainen, Matti; Ala-Korpela, Mika; Metso, Jari; Lehto, Tiina M.; Savolainen, Markku J.; Hannuksela, Minna L.
HDL2 of heavy alcohol drinkers enhances cholesterol efflux from raw macrophages via phospholipid-rich HDL2b particles.
Alcoholism-clinical and experimental research, 2008. Vol. 32, nro 6, pp. 991-1000.
Mäkinen, V.-P.; Forsblom, C.; Thorn, L. M.; Waden, J.; Gordin, D.; Heikkilä, O.; Hietala, K.; Kytoe, J.; Rosengard-Barlund, M.; Saraheimo, M.; Parkkonen, M.; Kaski, K.; Ala-Korpela, M.; Groop, P.H.
Multivariate biochemical basis of vascular complications and mortality in 4,197 patients with type I diabetes.
Diabetologia, 2008. Vol. 51, pp. S548-S548.
Mäkinen, V-P.; Forsblom, C.; Thorn, L.M.; Waden, J.; Gordin, D.; Heikkilä, O.; Hietala, K.; Kyllönen, L.; Kytö, J.; Rosengard-Baerlund, M.; Saraheimo, M.; Tolonen, N.; Parkkonen, M.; Kaski, K.; Ala-Korpela,
Metabolic phenotypes, vascular complications, and premature deaths in a population of 4,197 patients with type 1 diabetes.
Diabetes, 2008. Vol. 57, nro 9, pp. 2480-2487.
Mäkinen, V-P.; Soininen, P.; Forsblom, C.; Parkkonen, M.; Ingman, P.; Kaski, K.; Groop, P-H.; Ala-Korpela, M.
H-1 NMR metabonomics approach to the disease continuum of diabetic complications and premature death.
Molecular systems biology, 2008. Vol. 4, nro 167, pp. 1-12.
N
Nikulin, V. V.; Linkenkaer-Hansen, K.; Nolte, G.; Lemm, S.; Mueller, K. R.; Ilmoniemi, R. J.; Curio, G.
A novel mechanism for evoked responses in the human brain.
International journal of psychophysiology, 2008. Vol. 69, nro 3, pp. 214-214.
Nummenmaa Aapo, Vanni Simo, Vehtari Aki, Hämäläinen Matti S, Lampinen Jouko, Jääskeläinen Iiro P
Automatic fMRI-guided MEG multidipole localization for visual responses.
Human Brain Mapping, 2008. Vol. 8.
P
Poyry, S., Rog, T., Karttunen, M., and Vattulainen, I.
Significance of Cholesterol Methyl Groups.
Journal of Physical Chemistry B, 2008. Vol. 112, 2922-2929.
R
Raij, Tommi; Karhu, Jari; Kicic, Dubravko; Lioumis, Pantelis; Julkunen, Petro; Lin, Fa-Hsuan; Ahveninen, Jyrki; Ilmoniemi, Risto J.; Makela, Jyrki P.; Hämäläinen, Matti; Rosen, Bruce R.; Belliveau, John W.
Parallel input makes the brain run faster.
Neuroimage, 2008. Vol. 40, nro 4, pp. 1792-1797.
Rinne, T.; Balk, M.; Koistinen, S.; Autti, T.; Alho, K.; Sams, M.
Auditory Selective Attention Modulates Activation of Human Inferior Colliculus.
Journal of Neurophysiology, 2008. Vol. 100, nro 6, pp. 3323-3327.
Rog, T., Stimson, L. M., Pasenkiewicz-Gierula, M., Vattulainen, I., and Karttunen, M.
Replacing the cholesterol hydroxyl group by the ketone group facilitates sterol flip-flop and promotes membrane fluidity.
Journal of Physical Chemistry B, 2008. Vol. 112, 1946-1952.
S
Sams, M. E.
Active auditory system.
International journal of psychophysiology, 2008. Vol. 69, nro 3, pp. 199-199.
Smith, David M. D.; Lee, Chiu Fan; Onnela, Jukka-Pekka; Johnson, Neil F.
Link-space formalism for network analysis.
Physical review e, 2008. Vol. 77, nro 3, 036112/1-18.
Stenroos, Matti; Haueisen, Jens
Boundary element computations in the forward and inverse problems of electrocardiography: Comparison of collocation and Galerkin weightings.
IEEE Transactions on Biomedical Engineering, 2008. Vol. 55, nro 9, pp. 2124-2133.
Särkkä, Simo
Unscented Rauch-Tung-Striebel smoother.
IEEE Transactions on Automatic Control, 2008. Vol. 53, nro 3, pp. 845-849.
Särkkä, Simo; Sottinen, Tommi
Application of Girsanov Theorem to Particle Filtering of Discretely Observed Continuous - Time Non-Linear Systems.
Bayesian Analysis, 2008. Vol. 3, nro 03, 555-584.
T
Tallinen, T., Åstrom, J. A., Timonen, J.
Deterministic Folding in Stiff Elastic Membrane.
Physical Review Letters, 2008. Vol. 101, nro 10, 106101.
Tukiainen, T.; Tynkkynen, T.; Mäkinen, V-P.; Jylänki, P.; Kangas, A.; Hokkanen, J.;Vehtari, A.; Grohn, O.; Hallikainen, M.; Soininen, H.; Kivipelto, M.; Groop, P-H.; Kaski, K.; Laatikainen, R.; Soininen, P.
A multi-metabolite analysis of serum by H-1 NMR spectroscopy: Early systemic signs of Alzheimer's disease.
Biochemical and Biophysical Research Communications, 2008. Vol. 375, nro 3, 356-361.
V
Vesterinen, Paula; Väänänen, Heikki; Hanninen, Helena; Korhonen, Petri; Tierala, Ilkka; Husa, Terhi; Mäkijärvi, Markku; Toivonen, Lauri
Single-lead electrocardiographic variables in the detection of prior myocardial infarction with respect to Q-wave status and infarct age.
Cardiology, 2008. Vol. 109, nro 4, pp. 222-229.
Vesterinen, Paula; Väänänen, Heikki; Stenroos, Matti; Hanninen, Helena; Korhonen, Petri; Tierala, Ilkka; Husa, Terhi; Mäkijärvi, Markku; Tolvonen, Lauri
Localization of prior myocardial infarction by repolarization variables.
International journal of cardiology, 2008. Vol. 124, nro 1, pp. 100-106.
Viitasalo, Matti; Oikarinen, Lasse; Väänänen, Heikki; Kontula, Kimmo; Toivonen, Lauri; Swan, Heikki
U-waves and T-wave peak to T-wave end intervals in patients with catecholaminergic polymorphic ventricular tachycardial effects of beta-blockers.
Heart Rhythm, 2008. Vol. 5, nro 10, pp. 1382-1388.
W
Walsh, Timothy S.; Ramsay, Pamela; Lapinlampi, T. Petteri; Särkelä, Mika O. K.; Viertio-Oja, Hanna E.; Meriläinen, Pekka T.
An assessment of the validity of spectral entropy as a measure of sedation statein mechanically ventilated critically ill patients.
Intensive care medicine, 2008. Vol. 34, nro 2, pp. 308-315.
Y
Yrttiaho, Santeri; Tiitinen, Hannu; May, Patrick J. C.; Leino, Sakari; Alku, Paavo
Cortical sensitivity to periodicity of speech sounds.
Journal of the Acoustical Society of America, 2008. Vol. 123, nro 4, pp. 2191-2199.
Å
Åstrom, J.A.
Rotating bearings in regular and irregular granular shear packings.
European Physical Journal E. Soft Matter, 2008. Vol. 25, nro 1, pp. 25-29.

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