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Publications 2009

• Refereed journals
• Conference proceedings
• Books and other publications

Refereed Journals - Lehtiartikkelit

• A
• Alku, Paavo; Magi, Carlo; Yrttiaho, Santeri; Bäckström, Tom; Story, Brad
  Closed phase covariance analysis based on constrained linear prediction for glottal inverse filtering.
  The Journal of the Acoustical Society of America, 2009. Vol. 125, No. 5, pp. 3289-3305.
• Andersen, T. S.; Tiippana, Kaisa; Laarni, J.; Kojo, I.; Sams, Mikko
  The role of visual spatial attention in audiovisual speech perception.
  Speech Communication, 2009. Vol. 51, No. 2, pp. 184-193.
• Auranen, Toni; Nummenmaa, Aapo; Vanni, S.; Vehtari, Aki; Hämäläinen, MS.; Lampinen, Jouko; Jääskeläinen, Iiro
  Automatic fMRI-guided MEG multidipole localization for visual responses.
  Human Brain Mapping, 2009 . Vol. 30, No. 4, 1087-1099.
• B
• Bikmullina, R.; Kicic, Dubravko; Carlson, S.; Nikulin, V. V.
  Electrophysiological correlates of short-latency afferent inhibition: a combined EEG and TMS study.
  Experimental Brain Research, 2009. Vol. 194, No. 4, pp. 517-526.
• E
• Eisler, Zoltan; Kertesz, Janos; Lillo, Fabrizio; Mantegna, Rosario N
  Diffusive behavior and the modeling of characteristic times in limit order executions.
  Quantitative Finance, 2009. Vol. 9, No. 5, pp. 547-563.
• H
• Haldin, C.; Nymark, Soile; Aho, AC.; Koskelainen, Ari; Donner, K.
  Rod Phototransduction Determines the Trade-Off of Temporal Integration and Speed of Vision in Dark-Adapted Toads.
  Journal of Neuroscience, 2009. Vol. 29, No. 18, pp. 5716-5725.
• Heikkilä, Oskari; Oksanen, Jani; Tulkki, Jukka
  Ultimate limit and temperature dependency of light-emitting diode efficiency.
  Journal of Applied Physics, 2009. Vol. 105, No. 9, 093119.
• Heikkinen, Hanna; Nymark, Soile; Donner, K.; Koskelainen, Ari
  Temperature dependence of dark-adapted sensitivity and light-adaptation in photoreceptors with A1 visual pigments: A comparison of frog L-
  Vision Research, 2009. Vol. 49, No. 14, pp. 1717-1728.
• Heimo,Tapio; Kaski, Kimmo; Saramäki, Jari
  Maximal spanning trees, asset graphs and random matrix denoising in the analysis of dynamics of financial networks.
  PHYSICA A, 2009. Vol. 388, No. 2-3, pp. 145-146.
• Heiskala, J.; Hiltunen, P.; Nissilä, Ilkka
  Significance of background optical properties, time-resolved information and optode arrangement in diffuse optical imaging of term neonates.
  Physics in Medicine and Biology, 2009. Vol. 54, No. 3, pp. 535-554.
• Heiskala, Juha; Pollari, Mika; Metsäranta, Marjo; Grant, Ellen, P.; Nissilä, Ilkka
  Probablistic atlas can improve reconstruction from optical imaging of the neonatal brain.
  Optics Express, 2009. Vol. 17, No. 17, pp. 14977-14992.
• Hiltunen, Petri; Prince, S. J. D.; Arridge, S.
  A combined reconstruction classification method for diffuse optical tomography.
  Physics in Medicine and Biology, 2009. Vol. 54, No. 21, pp. 6457-6476.
• Hogman, Marieann; Lafih, Jaroslava; Meriläinen, Pekka; Broms, Kristina; Malinovschi, Andrei; Janson, Christer
  Extended NO analysis in a healthy subgroup of a random sample from a Swedish population.
  Clinical Physiology and Functional Imaging, 2009. Vol. 29, No. 1, pp. 18-23.
• Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka
  Exact theory for photon subtraction for fields from quantum to classical limit.
  Europhysics Letters, 2009. Vol. 87, No. 4, 44002.
• Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka
  On the origin of divergences in the coincidence probabilities in cavity photodetection experiments.
  Journal of Physics B: Atomic, Molecular and Optical Physics , 2009. Vol. 42, No. 14, 145506.
• I
• Iñiguez, Gerardo; Kertész, János; Kaski, Kimmo; Barrio, Rafael
  Opinion and community formation in coevolving networks.
  Physical Review E, 2009. Vol. 80, No. 6, 066119.
• J
• Jurkko, Raija; Mäntynen, Ville; Lehto, M.; Tapanainen, JM.; Montonen, J.; Parikka, H.; Toivonen, L.
  Intertrial conduction in patients with paroxysmal atrial fibrillation and in healthy subjects.
  International Journal of Cardiology, 2009. pp. 1-6.
• Jurkko, Raija; Mäntynen, Ville; Tapanainen, Jari; Montonen, Juha; Väänänen, Heikki; Parikka, Hannu; Toivonen, Lauri
  Non-invasive detection of conduction pathways to left atrium using magnetocardiography: validation by intra-cardiac electroanatomic mapping.
  Europace, 2009. Vol. 11, No. 2, pp. 169-177.
• K
• Kolehmainen, Ville; Schweiger, Martin; Nissilä, Ilkka; Tarvainen, Tanja; Arridge, Simon R.; Kaipio, Jari P.
  Approximation errors and model reduction in three-dimensional diffuse optical tomography.
  Journal of the Optical Society of America A, 2009. Vol. 26, No. 10, pp. 2257-2268.
• Korhonen, P.; Husa, T.; Konttila, Teijo; Tierala, I.; Mäkijärvi, M.; Väänänen, Heikki; Toivonen, L.
  Complex T-wave morphology in body surface potential mapping in prediction of arrhythmic events in patients with acute myocardial infarction
  Europace, 2009. Vol. 11, No. 4, pp. 514-520.
• Koskinen, S.; Putkonen, Päivi; Granström, M.; Gaily, E.
  Quality of Life After Epilepsy Surgery in Children and Adolescents.
  Epilepsia, 2009. Vol. 50, No. s4, p. 142.
• Kumpula, Jussi; Onnela, J.P.; Saramäki, Jari; Kertesz, Janos; Kaski, Kimmo
  Model of Community Emergence in Weighted Social Networks.
  Computer Physics Communications, 2009. Vol. 180, No. 4, pp. 517-522.
• L
• Laksameethanasan, Danai.; Brandt, Sami S.; Renaud, Olivier; Shorte, Spencer L.
  Dual filtered backprojection for micro-rotation confocal microscopy.
  Inverse Problems, 2009. Vol. 25, 015006.
• Lambiotte R.; Saramäki Jari; Blondel VD.
  Dynamics of latent voters.
  Physical Review E, 2009. Vol. 79, No. 4, 046107.
• Lehto, M.; Jurkko, R.; Parikka, H.; Mäntynen, V.; Väänänen, Heikki; Montonen, J.; Voipio-Pulkki, L.; Toivonen, L.; Laine, M.
  Reversal of Atrial Remodeling after Cardioversion of Persistent Atrial Fibrillation Measured with Magnetocardiography.
  Pacing and Clinical Electrophysiology, 2009. Vol. 32, No. 2, pp. 217-223.
• Lehtola, Ville; Linna, Riku; Kaski, Kimmo
  Dynamics of forced biopolymer translocation.
  Europhysics Letters, 2009. Vol. 85, No. 058006, pp. 1-6.
• Liimatainen, T.; Hakumäki, J.M.; Kauppinen, R.A.; Ala-Korpela, Mika
  Monitoring of gliomas in vivo by diffusion MRI and 1H MRS during gene therapy induced apoptosis – interrelationships between water diffusion
  NMR in Biomedicine, 2009. Vol. 22, No. 3, pp. 272-279.
• Lioumis, P.; Kicic, Dubravko; Savolainen, P.; Mäkelä, J. P.; Kähkönen, S.
  Reproducibility of TMS - Evoked EEG Responses.
  Human Brain Mapping, 2009. Vol. 30, No. 4, pp. 1387-1396.
• M
• Marjamaa, A.; Newton-Cheh, C.; Porthan, K.; Reunanen, A.; Lahermo, P.; Väänänen, H.; Jula, A.; Karanko, H.; Swan, H.; Toivonen, L.; Nieminen, M. S; Viitasalo, M.; Peltonen, L.; Oikarinen, L.; Palotie, A.; Kontula, K.; Salomaa, V.
  Common candidate gene variants are associated with QT interval duration in the general population.
  Journal of Internal Medicine, 2009. Vol. 265, No. 4, pp. 448-458.
• Marjamaa, A.; Salomaa, V.; Newton-Cheh, C.; Porthan, K.; Reunanen, A.; Karanko, H.; Jula, A.; Lahermo, P.; Väänänen, Heikki; Toivonen, Lauri; Swan, H.; Viitasalo, M.; Nieminen, MS.; Peltonen, L.; Oikarinen, L.; Palotie, A.; Kontula, K.
  High prevalence of four long QT syndrome founder mutations in the Finnish population.
  Annals of Medicine, 2009. Vol. 41, No. 3, pp. 234-40.
• Mäkinen VP; Forsblom C; Thorn LM; Waden J; Kaski Kimmo, Ala-Korpela, M; Groop, P. - H.
  Network approach to type 1 diabetes: association patterns between diabetic complications and metabolic, clinical and life style risk factors in a
  Diabetologia, 2009. Vol. 52, No. s1, pp. 383-383.
• Mäkinen, VP; Forsblom, Carol; Thorn, Lena; Waden, Johan; Kaski, Kimmo; Ala-Korpela, Mika; Groop, Per-Henrik
  Network of vascular diseases, death and biochemical characteristics in a set of 4,197 patients with type 1 diabetes (The FinnDiane Study).
  Cardiovascular Diabetology, 2009. Vol. 8, No. 54.
• N
• Niemi, J.; Mäkinen, Ville-Petteri; Heikkonen, J.; Tenkanen, L.; Hiltunen, Y.; Hannuksela, M.; Jauhiainen, M.i; Forsblom, C.; Taskinen, M-R; Kesaniemi, Y; Savolainen, M.; Kaski, Kimmo; Groop PH; Kovanen, P.; Ala-Korpela, M.
  Estimation of VLDL, IDL, LDL, HDL2, apoA-I, and apoB from the Friedewald inputs-apoB and IDL, but not LDL, are associated with mortality in
  Annals of Medicine, 2009. Vol. 41, No. 6, pp. 451-469.
• Noponen, Tommi; Nordh, Anders; Berg, Ansgar; Ley, David; Hansson, Stefan R.; Pesonen, Erkki; Fellman, Vineta
  Circulatory eccects of inhaled iloprost in the newborn preterm lamb.
  Pediatric Research, 2009. Vol. 66, No. 4, pp. 416-422.
• O
• Onnela, Jukka-Pekka.; Töyli, J.; Kaski, Kimmo
  Tick size and stock returns.
  Physica A, 2009. Vol. 388, No. 4, pp. 441-454.
• Onnela, Jukka-Pekka; Johnson, N.F.; Gourley, S.; Reinert, G.; Spagat, M.
  Sampling bias in systems with structural heterogeneity and limited internal diffusion.
  Europhysics Letters, 2009. Vol. 85, No. 2, 28001.
• Ou WM.; Nissilä Ilkka; Radhakrishnan H.; Boas DA.; Hämäläinen MS.; Franceschini MA.
  Study of neurovascular coupling in humans via simultaneous magnetoencephalography and diffuse optical imaging acquisition.
  NeuroImage, 2009. Vol. 46, No. 3, pp. 624-632.
• P
• Plimak, L.; Stenholm, Stig
  Causal signal transmission by quantum fields. III: Coherent response of fermions.
  Annals of Physics, 2009. Vol. 324, No. 3, pp. 600-636.
• Porter, Mason; Onnela, Jukka-Pekka; Mucha, Peter
  Communities in Networks.
  Notices of the AMS, 2009. Vol. 56, No. 9, pp. 1082-1166.
• Porthan, K.; Viitasalo, M.; Hiltunen, T.; Väänänen, Heikki; Dabek, Juhani; Suonsyrjä, T.; Hannila-Handenberg, T.; Virolainen, J.; Nieminen, MS.;
  Short-term Electrophysiological Effects of Losartan, Bisprolol, Amlodipine and hydrochlorothiazide in Hypertensive Men.
  Annals of Medicine, 2009. Vol. 41, No. 1, pp. 29-37.
• Porthan, K.; Viitasalo, M.; Jula, A.; Reunanen, A.; Rapola, J.; Väänänen, Heikki; Nieminen, MS; Toivonen, L.; Salomaa, V.; Oikarinen, L.
  Predective Value of Electrocardiographic QT interval and T-wave morphology parameters for all-cause and acrdiovascular mortality in a general
  Heart Rhythm, 2009. Vol. 6, No. 8, pp. 1202-8.
• Praxmeyer, Ludmila; Stenholm, Stig.; Vitanov, Nikolay
  Characteristics of a pure-state ambiguity function.
  Journal of Physics A: Mathematical and Theoretical, 2009. Vol. 42, No. 49, 495301.
• Praxmeyer, Ludmila; Stenholm, Stig; Vitanov, Nikolay
  The information of ambiguity.
  Journal of Modern Optics, 2009. Vol. 56, No. 10, pp. 1205-1219.
• Putkonen, Päivi; Jutila, L.; Aronen, P.; Immonen, A.; Kinnunen, J.; Sintonen H (Sintonen, H.; Kälviäinen, R.
  Cost-effectiveness of Surgery for Intractable Temporal Lobe Epilepsy.
  Epilepsia, 2009. Vol. 50, No. s4, p. 260.
• Putkonen, Päivi; Kälviäinen, Reetta
  Ohimolohkoon kohdistuva epilepsiakirurgia on kustannusvaikuttavaa hoitoa.
  Duodecim, 2009. Vol. 125, No. 22, pp. 2500-2.
• R
• Reijonsaari, Karita; Vehtari, Aki; Van Mechelen, Willem; Aro, Timo; Taimela, Simo
  The effectiveness of physical activity monitoring and distance counselling in an occupational health seting - a research protocol for a
  BMC Public Health, 2009. Vol. 9, p. 494.
• S
• Salminen, Nelli; May, Patrick; Alku, Paavo; Tiitinen Hannu
  A population rate code of auditory space in the human cortex.
  PLoS ONE, 2009. Vol. 4, No. 10, pp. e7600.
• Salminen, Nelli; Tiitinen, Hannu; May, Patrick J. C.
  Modeling the categorical perception of speech sounds: A step toward biological plausibility.
  Cognitive, Affective, & Behavioral Neuroscience, 2009. Vol. 9, No. 3, 304-313.
• Siebner, H.; Bergmann, T.; Bestmann, S.; Massimini, M.; Johansen-Berg, H.; Mochizuki, H.; Bohning, D.; Boorman, E.; Groppa, S.; Miniussi, C.; Pascual- Leone, A.; Huber, R.; Taylor, P..; Ilmoniemi, Risto; et. Al
  Consensus paper: Combining transcranial stimulation with neuroimaging.
  BRAIN STIMULATION, 2009. Vol. 2, No. 2, 58-80.
• Smith, David; Onnela, Jukka-Pekka; Fan Lee, Chiu; Fricker, Mark; Johnson; Neil
  Network Automata: Coupling structure and function in real-world networks.
  arXiv.org, 2009. pp. 1-7.
• Smith, DMD; Onnela, Jukka-Pekka; Jones, NS.
  Master-equation analysis of accelerating networks.
  Physical Review E, 2009. Vol. 79, No. 5, 056101.
• Stenholm, Stig
  Entanglement of Pure States.
  Foundations of Physics, 2009. Vol. 39, No. 6, pp. 642-655.
• Stenroos, Matti
  The transfer matrix for epicardial potential in a piece-wise homogeneous thorax model: the boundary element formulation.
  Physics in Medicine and Biology, 2009. Vol. 54, No. 18, pp. 5443-5455.
• Sund, R.; Riihimäki, Jaakko; Mäkelä, M.; Vehtari, Aki; Lüthje, P.; Huusko, T.; Häkkinen, U.
  Modeling the length of care episode after hip fracture: does the type of fracture matter?.
  Scandinavian Journal of Surgery, 2009.
• Susac, Ana; Ilmoniemi, Risto J.; Pihko, Elina; Nurminen, Jussi; Supek, Selma
  Early Dissociation of Face and Object Processing: A Magnetoencephalographic Study.
  Human Brain Mapping, 2009. Vol. 30, No. 3 , pp. 917-927.
• Särkelä, Heikki; Takatalo, Jari; May, Patrick; Laakso, Mikko; Nyman, Gote
  The movement patterns and the experiential components of virtual environments.
  International Journal of Human-Computer Studies, 2009. Vol. 67, No. 9, pp. 787-799.
• Särkkä, Särkkä; Nummenmaa Aapo
  Recursive Noise Adaptive Kalman Filtering by Variational Bayesian Approximations.
  IEEE Transactions on Automatic Control, 2009. Vol. 54, No. 3, pp. 596-600.
• T
• Tallinen, T.; Åström, Jan; Timonen, J.
  The effect of plasticity in crumpling of thin sheets.
  Nature Materials, 2009. Vol. 8, No. 1, pp. 25-29.
• Toivonen, Riitta; Castelló, X.; Eguíluz, V.M.; Saramäki, Jari; San Miguel, M.; Kaski, Kaski
  Broad lifetime distributions for ordering dynamics in complex networks.
  Physical Review E, 2009. Vol. 79, No. 1, 016109.
• Toivonen, Riitta; Kovanen, Lauri; Kivela, Mikko; Onnela, Jukka-Pekka; Saramaki, Jari; Kaski, Kimmo
  A comparative study of social network models: Network evolution models and nodal attribute models.
  Social Networks, 2009. Vol. 31, No. 4, pp. 240-254.
• Toth, Bence; Kertesz, Janos
  The Epps effect revisited.
  Quantitative Finance, 2009. Vol. 9, No. 7, pp. 793-802.
• V
• Vanhatalo, Jarno; Vehtari, Aki
  Discussion to 'Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations' by Håvard Rue,
  Journal of the Royal Statistical Society, Series B (Statistical Methodology), 2009. Vol. 71, No. 2, 383.
• Vilen H.; Hynönen U.; Badelt-Lichtblau H.; Ilk N.;Jääskeläinen Pentti; Torkkeli M.; Palva A.
  Surface Location of Individual Residues of SlpA Provides Insight into the Lactobacillus brevis S-Layer.
  Journal of Bacteriology, 2009. Vol. 191, No. 10, pp. 3339-3349.
• Vinberg, Frans J.; Strandman, Satu; Koskelainen, Ari
  Origin of the fast negative ERG component from isolated aspartate-treated mouse retina.
  Journal of Vision, 2009. Vol. 9, No. 12, pp. 1-17.
• Virtanen, Jaakko; Noponen, Tommi; Meriläinen, Pekka
  Comparison of principal and independent component analysis in removing extracerebral interference from near-infrared spectroscopy signals.
  Journal of Biomedical Optics, 2009. Vol. 14, No. 5, 054032.
• Vitikainen, A. - M.; Lioumis, P.; Paetau, R.; Salli, E.; Komssi, S.; Metsähonkala, L.; Paetau, A.; Kicic, Dubravko; Blomstedt, G.; Valanne, L.; Mäkelä, J.P.;
  Combined use of non-invasive techniques for improved functional localization for a selected group of epilepsy surgery candidates.
  Neuroimage, 2009. Vol. 45, No. 2, pp. 342-348.
• W
• Wang, Jade; Nicol, Trent; Skoe, Erika; Sams, Mikko; Kraus, Nina
  Emotion Modulates Early Auditory Response to Speech.
  Journal of Cognitive Neuroscience, 2009. Vol. 21, No. 11, pp. 2121-2128.
• Y
• Yrttiaho Santeri.; Alku Paavo; May Patrick; Tiitinen Hannu
  Representation of the vocal roughness of aperiodic speech sounds in the auditory cortex.
  Journal of the Acoustical Society of America, 2009. Vol. 125, No. 5, pp. 3177-3185.
• Å
• Åström, Jan A.; Kumar, P. B. Sunil; Karttunen, M.
  Aster formation and rupture transition in semi-flexible fiber networks with mobile cross-linkers.
  Soft Matter, 2009. Vol. 5, No. 15, pp. 2869-2874.

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