BECS Publications 2012

Ahveninen J, Jääskeläinen IP, Belliveau JW, Hämäläinen M, Lin F-H, Raij T
Dissociable influences of auditory object vs. spatial attention on visual system oscillatory activity.
PLOS ONE, Vol. 7, no 6, e38511, 2012.

Alho, Jussi; Sato, Marc; Sams, Mikko; Schwartz, Jean-Luc; Tiitinen, Hannu; Jääskeläinen, Iiro P.
Enhanced early-latency electromagnetic activity in the left premotor cortex is associated with successful phonetic categorization.
NeuroImage 60, pp. 1937-1946. DOI: 10.1016/j.neuroimage.2012.02.011

Alluri, Vinoo; Toiviainen, Petri; Jääskeläinen, Iiro P.; Glerean, Enrico; Sams, Mikko; Brattico, Elvira
Large-scale brain networks emerge from dynamic processing of musical timbre, key and rhythm.
NeuroImage, Vol. 59, nro 4, pp. 3677–3689, 2012. (DOI: 10.1016/j.neuroimage.2011.11.019)

Andermann ML, Kauramäki J, Palomäki T, Moore CI, Hari R, Jääskeläinen IP, Sams M
Brain state-triggered stimulus delivery: an efficient tool for probing ongoing brain activity.
Open Journal of Neuroscience, Vol. 2, no 5, pp. 1-18, 2012.

K.-L. Chi, J.-W. Shi, C. H. Jang, P. Kivisaari, J. Oksanen, J. Tulkki, M. L. Lee, J. K. Sheu.
Carrier Dynamics in High-Efficiency Blue GaN Light-Emitting Diodes Under Different Bias Currents and Temperatures.
IEEE Photonics J. 4, 1870, 2012.

Dabek, Juhani; Vesanen, Panu T.; Zevenhoven, Koos C. J.; Nieminen, Jaakko O.; Sepponen, Raimo; Ilmoniemi, Risto J.
SQUID-sensor-based ultra-low-field MRI calibration with phantom images: Towards quantitative imaging.
Journal of Magnetic Resonance, Vol. 224, no 1, pp. 22-31, 2012.

Daniela Buckiová, Sanjeev Ranjan, Tracey A. Newman, Alexander H. Johnston, Rohit Sood, Paavo K. J. Kinnunen, Jirí Popelár, Tetyana Chumak, Josef Syka
Minimally Invasive Drug Delivery to the Cochlea Through Application of Nanoparticles to the Round Window Membrane.
Nanomedicine, No 9, pp. 1339-1354, 2012.

Delezuch, W.; Marttinen, P.; Kokki, H.; Heikkinen, M.; Vanamo, K.; Pulkki, K.; Matinlauri, I.
Serum and CSF soluble CD26 and CD30 concentrations in healthy pediatric surgical outpatients.
Tissue Antigens, Vol. 80, no 4, pp. 368-375, 2012.

Fortunato, Santo; Castellano, Claudio
Physics peeks into the ballot box.
Physics Today, Vol. 65, no 10, 74, 2012.

Krings Gautier; Karsai Márton; Bernhardsson Sebastian; Blondel Vincent; Saramaki Jari
Effects of time window size and placement on the structure of aggregated networks.
EPJ Data Science, Vol. 1, No. 4, 2012.

Glerean E, Salmi J, Lahnakoski J, Jääskeläinen IP, Sams M
Functional magnetic resonance imaging phase synchronization as a measure of dynamic functional connectivity.
Brain Connectivity, Vol. 2, no 2, pp. 91-101, 2012.

Gorbenko G, Trusova V, Sood R, Molotkovsky J, Kinnunen P
The effect of lysozyme amyloid fibrils on cytochrome c-lipid interactions.
Chem Phys Lipids, Vol. 165, no 7, 769, 2012.

Gordin, Daniel; Waden, Johan; Forsblom, Carol; Thorn, Lena M. et al.
Arterial stiffness and vascular complications in patients with type 1 diabetes: The Finnish Diabetic Nephropathy (FinnDiane) Study.
Annals of medicine, Vol. 44, no 2, pp. 196-204, 2012.

Hernandez-Pavon, JC.; Metsomaa, J.; Mutanen, T.; Stenroos, M.; Mäki, H.; Ilmoniemi, RJ.; Sarvas, J.
Uncovering neural independent components from highly artifactual TMS-evoked EEG data.
Journal of Neuroscience Methods, Vol. 209, no 1, pp. 144-–157, 2012.

Holme Petter; Saramaki Jari
Temporal Networks.
Physics Reports, Vol. 519, no 3, pp. 97-125, 2012.

Häyrynen Teppo; Oksanen, Jani; Tulkki Jukka
Nonlinear laser cavities as nonclassical light sources.
Europhys. Lett., Vol. 100, no 5, 54001, 2012.

T. Häyrynen, J. Oksanen, and J. Tulkki
Photon dynamics of amplified and damped cavity fields.
Phys. Status Solidi C 9, 1330, 2012.

H.-H. Jo, M. Karsai, J. Kertesz, and K. Kaski
Circadian pattern and burstiness in mobile phone communication.
New Journal of Physics 14, 013055, 2012.

H.-H. Jo, E. Moon, and K. Kaski
Optimized reduction of uncertainty in bursty human dynamics.
Physical Review E 85, 016102, 2012.

H.-H. Jo, R.K. Pan, and K. Kaski
Time-varying priority queuing models for human dynamics.
Physical Review E 85, 066101, 2012.

H.-H. Jo, M. Karsai, J. Karikoski, and K. Kaski
Spatiotemporal correlations of handset-based service usages.
EPJ Data Science 1, 10, 2012. (doi:10.1140/epjds10)

Heikki Joensuu, Mikael Eriksson, Kirsten Sundby Hall, et al.
One vs Three Years of Adjuvant Imatinib for Operable Gastrointestinal Stromal Tumor: A Randomized Trial.
The Journal of American Medical Association, Vol. 307, no 12, pp. 1265-1272, 2012.

Joensuu, Heikki; Vehtari, Aki; Riihimaki, Jaakko; Nishida, Toshirou et al.
Risk of recurrence of gastrointestinal stromal tumour after surgery: an analysis of pooled population-based cohorts.
Lancet oncology, Vol. 13, no 3, pp. 265-274, 2012.

H. Jussila, P. Mattila, J. Oksanen, A. Perros, J. Riikonen, M. Bosund, A. Varpula, T. Huhtio, H. Lipsanen, and M. Sopanen
High-k GaAs metal insulator semiconductor capacitors passivated by ex-situ plasma-enhanced atomic layer deposited AlN for Fermi-level unpinning.
Appl. Phys. Lett. 100, 071606, 2012.

Karsai, Márton; Kaski, Kimmo; Kertész, János
Correlated dynamics in egocentric communication networks.
PLoS ONE, Vol. 7, no 7, 2012.

Karsai, Márton; Kaski, Kimmo; Barabási, Albert-László; Kertész, János
Universal features of correlated bursty behaviour.
Nature Scientific Reports, 2012. Vol. 2, no 397, 2012.

Kauramäki J, Jääskeläinen IP, Hänninen JL, Auranen T, Nummenmaa A, Lampinen J, Sams M
Two-stage processing of sounds explains behavioral performance variations due to changes in stimulus contrast and selective attention: an MEG study.
PLoS ONE, Vol. 7, no 10, e48872, 2012.

Kinnunen, Paavo K.J.; Kaarniranta, Kai; Mahalka, Ajay K.
Protein-oxidized phospholipid interactions in cellular signaling for cell death: From biophysics to clinical correlations.
Biochimica et Biophysica Acta, Vol. 1818, no 10, pp. 2446–2455, 2012.

Kivela, Mikko; Pan, Raj Kumar; Kaski, Kimmo; Kertesz, Janos; Saramaki, Jari; Karsai, Marton
Multiscale analysis of spreading in a large communication network.
Journal of statistical mechanics-theory and experiment, 00000P03005/1-32, 2012.

P. Kivisaari, J. Oksanen, and J. Tulkki
Effects of lateral current injection in GaN multi-quantum well light-emitting diodes.
J. Appl. Phys. 111, 103120, 2012.

P. Kivisaari, L. Riuttanen, J. Oksanen, S. Suihkonen, M. Ali, H. Lipsanen, and J. Tulkki
Electrical measurement of internal quantum efficiency and extraction efficiency of III-N light-emitting diodes.
Appl. Phys. Lett. 101, 021113, 2012.

Kuusisto, Sanna M.; Peltola, Tomi; Laitinen, Maria; Kumpula, Linda S.; Mäkinen, Ville-Petteri; Salonurmi, Tuire; Hedberg, Pirjo; Jauhiainen, Matti; Savolainen, Markku J.; Hannuksela, Minna L.; Ala-Korpela, Mika
The interplay between lipoprotein phenotypes, adiponectin, and alcohol consumption.
Annals of medicine, Vol. 44, no 5, pp. 513-522, 2012.

Lahnakoski J.M., Salmi J., Jääskeläinen I.P., Lampinen J., Glerean E., et al.
Stimulus-Related Independent Component and Voxel-Wise Analysis of Human Brain Activity during Free Viewing of a Feature Film.
PLoS ONE 7(4): e35215, 2012, DOI: 10.1371/journal.pone.0035215

Lahnakoski J.M., Glerean E., Salmi J., Jääskeläinen I.P., Sams M., Hari R. and Nummenmaa L.
Naturalistic fMRI mapping reveals superior temporal sulcus as the hub for the distributed brain network for social perception.
Front. Hum. Neurosci. 6:233, 2012, DOI: 10.3389/fnhum.2012.00233

Lancichinetti, Andrea; Fortunato, Santo
Consensus clustering in complex networks.
Scientific Reports 2:336, 2012, DOI: 10.1038/srep00336

Linna, R. P. and Kaski, K.
Event distributions of polymer translocation.
Physical Review E, Vol.85, 041910, 2012, DOI: 10.1103/PhysRevE.85.041910

Lioumis, Pantelis, Zhdanov, Andrey; Mäkelä, Niko; Lehtinen, Henri; Wilenius, Juha; Neuvonen, Tuomas; Hannula, Henri; Deletis, Vedran; Picht, Thomas; Mäkelä, Jyrki P.
A novel approach for documenting naming errors induced by navigated transcranial magnetic stimulation.
Journal of Neuroscience Methods Vol. 204, no 12, pp. 349-354, 2012.

Mbalawata I. S., Särkkä S. and Haario H.
Parameter Estimation in Stochastic Differential Equations with Markov Chain Monte Carlo and Non-Linear Kalman Filtering.
Computational Statistics, in press. DOI: 10.1007/s00180-012-0352-y

Miettinen, Ismo; Alku, Paavo; Yrttiaho, Santeri; May, Patrick; Tiitinen, Hannu
Cortical processing of degraded speech sounds: Effects of distortion type and continuity.
NeuroImage, Vol. 60, no 2, pp. 1036-1045. DOI: 10.1016/j.neuroimage.2012.01.085

Myllymäki, M., Panoutsopoulou, I.G. and Särkkä, A.
Analysis of spatial structure of epidermal nerve entry point patterns based on replicated data.
Journal of Microscopy, Vol. 247, no 3, pp. 228-239, 2012.

Mäkinen, Ville-Petteri; Tynkkynen, Tuulia; Soininen, Pasi; Forsblom, Carol; Peltola, Tomi; Kangas, Antti J.; Groop, Per-Henrik; Ala-Korpela, Mika
Sphingomyelin is associated with kidney disease in type 1 diabetes (The FinnDiane Study).
Metabolomics, Vol. 8, no 3, pp. 369-375, 2012.

Mäkinen, Ville-Petteri; Tynkkynen, Tuulia; Soininen, Pasi; Peltola, Tomi; Kangas, Antti J.; Forsblom, Carol; Thorn, Lena M.; Kaski, Kimmo; Laatikainen, Reino; Ala-Korpela, Mika; Groop, Per-Henrik
Metabolic Diversity of Progressive Kidney Disease in 325 Patients with Type 1 Diabetes (the FinnDiane Study).
Journal of proteome research, Vol. 11, nro 3, pp. 1782-1790, 2012.

Tiina Näsi, Jaakko Virtanen, Jussi Toppila, Tapani Salmi, Risto J. Ilmoniemi
Cyclic Alternating Pattern Is Associated with Cerebral Hemodynamic Variation: A Near-Infrared Spectroscopy Study of Sleep in Healthy Humans.
Plos One, Vol. 7, no 10, e46899, 2012.

Vasyl Palchykov, Kimmo Kaski, Janos Kertész, Albert-László Barabási, Robin I. M. Dunbar
Sex differences in intimate relationships.
Scientific Reports 2:370, 2012, DOI: 10.1038/srep00370

Pan, Raj Kumar; Saramaki, Jari
The strength of strong ties in scientific collaboration networks.
Epl, Vol. 97, no 1, 018007/1-6, 2012.

Pan, Raj Kumar; Sinha, Sitabhra; Kaski, Kimmo; Saramaki, Jari
The evolution of interdisciplinarity in physics research.
Scientific Reports, Vol. 2, no 551, pp. 1-8, 2012.

Pan, Raj Kumar; Kaski, Kimmo; Fortunato, Santo
World citation and collaboration networks: uncovering the role of geography in science.
Scientific Reports, 2:902, 2012.

Partanen, Mikko; Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka
Noiseless amplification of weak coherent fields exploiting energy fluctuations of the field.
Physical review A, Vol. 86, no 6, 063804, 2012.

Peltola, Tomi; Marttinen, Pekka; Vehtari, Aki
Finite Adaptation and Multistep Moves in the Metropolis-Hastings Algorithm for Variable Selection in Genome-Wide Association Analysis.
Plos one, Vol. 7, no 11, 49445, 2012.

Peltola, Tomi; Marttinen, Pekka; Jula, Antti; Salomaa, Veikko; Perola, Markus; Vehtari, Aki
Finite Bayesian Variable Selection in Searching for Additive and Dominant Effects in Genome-Wide Data.
Plos one, Vol. 7, no 1, 00000e29115/1-11, 2012.

Rantonen,Jorma; Luoto, Satu; Vehtari, Aki; Hupli, Markku; Karppinen, Jaro; Malmivaara, Antti; Taimela, Simo
The effectiveness of two active interventions compared to self-care advice in employees with non-acute low back symptoms. A randomised, controlled trial with a 4-year follow-up in the occupational health setting.
Occupational and Environmental Medicine, Vol. 69, no 1, pp. 12-20, 2012.

Salminen, Nelli; Tiitinen, Hannu; May, Patrick
Auditory spatial processing in the human cortex.
The Neuroscientist, Vol. 18, no 6, pp. 602-612, 2012.

Sarmavuori, Juha; Särkkä, Simo
Fourier-Hermite Kalman Filter.
IEEE Transactions on Automatic Control, Vol. 57(6), pp. 1511-1515, 2012.

Särkkä, Simo; Sarmavuori, Juha
Gaussian Filtering and Smoothing for Continuous-Discrete Dynamic Systems.
Signal Processing. (In Press)

Särkkä, Simo; Solin, Arno; Nummenmaa, Aapo; Vehtari, Aki; Auranen, Toni; Vanni, Simo; Lin, Fa-Hsuan
Dynamic Retrospective Filtering of Physiological Noise in BOLD fMRI: DRIFTER.
NeuroImage, 2012. Vol. 60(2), pp. 1517-1527.

Särkkä, Simo; Viikari, Ville; Huusko, Miika; Jaakkola, Kaarle
Phase-Based UHF RFID Tracking with Non-Linear Kalman Filtering and Smoothing.
IEEE Sensors Journal, 2012. Vol. 12(5), pp. 904-910.

Sääskilahti, Kimmo; Oksanen, Jani; Linna, Riku; Tulkki, Jukka
Thermal conduction and interface effects in nanoscale Fermi-Pasta-Ulam conductors.
Physical Review E, Vol. 86, no 3, 031107, 2012.

Sanjeev Ranjan, Rohit Sood, Jozsef Dudas, Rudolf Glueckert, Anneliese Schrott-Fischer, Soumen Roy, Ilmari Pyykkö, and Paavo K.J. Kinnunen
Peptide-Mediated Targeting of Liposomes to TrkB Receptor Expressing Cells.
International Journal of Nanomedicine, Vol. 7, pp. 3475-3485, 2012.

Tejera-Garcia, Roberto; Connell, Lisa; Shaw, Walter A.; Kinnunen, Paavo K. J.
Gravimetric determination of phospholipid concentration.
Chemistry and physics of lipids, Vol. 165, no 6, pp. 689-695, 2012.

Toivonen, R., Kivelä, M., Saramäki, J., Viinikainen, M., Vanhatalo, M; Sams, Mikko
Networks of Emotion Concepts.
PLoS ONE 7(1): e28883. doi:10.1371/journal.pone.0028883

Vesanen, Panu; Nieminen, Jaakko; Zevenhoven, Koos; Dabek, Juhani; Simola, Juha; Sarvas, Jukka; Ilmoniemi, Risto.
The spatial and temporal distortion of magnetic fields applied inside a magnetically shielded room.
IEEE Transactions on Magnetics, 2012. Vol. 48, No. 1, pp. 53–61.

Viinikainen, Mikko; Kätsyri, Jari; Sams, Mikko
Representation of perceived sound valence in the human brain.
Human Brain Mapping, DOI: 10.1002/hbm.21362.

Viinikainen M, Jääskeläinen IP, Balk MH, Autti T, Sams M
Neural processing of emotional valence of facial expressions.
Open Journal of Neuroscience, Vol. 2, no 3, pp. 1-20, 2012.

Viinikainen M, Glerean E, Jääskeläinen IP, Kettunen J, Sams M, Nummenmaa L
Nonlinear neural representation of emotional feelings elicited by dynamic naturalistic stimulation.
Open Journal of Neuroscience, Vol. 2, no 4 , pp. 1-17, 2012.

Jing Zou, Rohit Sood, Sanjeev Ranjan, Dennis Poe, Usama Abo Ramadan, Ilmari Pyykkö, and Paavo K. J. Kinnunen
Size-Dependent Passage of Liposome Nanocarriers With Preserved Posttransport Integrity Across the Middle-inner Ear Barriers in Rats.
Otology & Neurotology, Vol. 33, no 4, pp. 666-673, 2012.